Seminars of the Focus Area Complex Systems

Prof. Dr. C. Beta, Prof. Dr. K. Dethloff, Prof. Dr. R. Engbert, Prof. Dr. M. Holschneider, Prof. Dr. W. Huisinga, Prof. Dr. Ralf Metzler, Prof. Dr. A. Pikovsky, Prof. Dr. S. Reich, Prof. Dr. M. Rosenblum, Prof. Dr. G. Rüdiger, Prof. Dr. T. Scheffer, Prof. Dr. F. Scherbaum, Prof. Dr. J. Selbig, Prof. Dr. F. Spahn


Speaker: Uwe Ohler, MCD Berlin-Buch

Title: Computational analysis of Arabidopsis post-transcriptional gene regulation from deep sequencing data * Bioinformatics Affinity Seminar

Time: Wed, May 8, 2013, 10am

Place: MPI für Molekulare Pflanzenphysiologie, Room 0.21 in The Box

The combination of fluorescent marker-based sorting and deep sequencing has made it possible to profile the mRNA and small RNA content across many cell types. However, many deep sequencing protocols require the development of new and dedicated statistical and computational approaches. I will present our work in the context of Arabidopsis root development, including miRNA identification and expression quantification, as well as ongoing efforts to detect antisense transcription and cell-type specific functional alternative splicing.

Back to the seminar schedule

Past NLD Seminars (1994-2007) & (2008 ...)

Students' seminar: Theoretical Physics, PIK, Modeling & TSA Berlin-Potsdam-Colloquia: PhysGesellschaft Berlin, TU Berlin, Pro Physik, AIP, AEI, MPI-KGF, GFZ, HMI, PIK, AWI, Max Planck Institute for the History of Science, Mathematik, DPG Disputationen, & Vorschau UP

Udo Schwarz, Zentrum für Dynamik komplexer Systeme,
Universität Potsdam, Campus Golm Karl-Liebknecht-Str. 24, 14476 Potsdam, building 28, room 2.107
Phone: (+49-331) 977-1658, Fax : (+49-331) 977-1045

Email: Udo.Schwarz AT

DFG SFB 1294

DFG Sonderforschungsbereich 1294 Data assimilation

DFG SPP 1488

DFG Schwerpunktprogramm 1488 Planetmag

News: odeint C++ library

Check out boost::odeint – our fast and flexible C++ library for integrating differential equations!