Seminars of the Focus Area Complex Systems

Prof. Dr. C. Beta, Prof. Dr. K. Dethloff, Prof. Dr. R. Engbert, Prof. Dr. M. Holschneider, Prof. Dr. W. Huisinga, Prof. Dr. Ralf Metzler, Prof. Dr. A. Pikovsky, Prof. Dr. S. Reich, Prof. Dr. M. Rosenblum, Prof. Dr. G. Rüdiger, Prof. Dr. T. Scheffer, Prof. Dr. F. Scherbaum, Prof. Dr. J. Selbig, Prof. Dr. F. Spahn

Seminar

Speaker: Matthias Steinfath, MPI-MP Bioinformatics Group

Title: Structural change point analysis for molecular seed developmental data

Time: Wed, June 8, 2011, 10am

Place: MPI für Molekulare Pflanzenphysiologie, Room 0.21 in The Box

Abstract:
This work focuses on the metabolism of fatty acid synthesis and storage protein synthesis during plant seed development. The associated products are of high agronomical interest. The mechanisms involved in the generation of the seed storage products and the regulation thereof are, therefore, subject of many research studies. In order to improve the understanding of these processes, the detection of metabolic sites where the distribution of fluxes are altered, as well as that of the developmental stages, at which such alterations occur, is important. The latter are denoted as change points (CP). The time course of molecular quantities are described by different models before and after such a CP. Linear change point detection methods from the R package "strchange" are applied to time series data from Arabidopsis thaliana seeds. Results are presented for proteins, lipids and metabolites obtained with these methods.

Back to the seminar schedule



Past NLD Seminars (1994-2007) & (2008 ...)

Students' seminar: Theoretical Physics, PIK, Modeling & TSA Berlin-Potsdam-Colloquia: PhysGesellschaft Berlin, TU Berlin, Pro Physik, AIP, AEI, MPI-KGF, GFZ, HMI, PIK, AWI, Max Planck Institute for the History of Science, Mathematik, DPG Disputationen, & Vorschau UP

Udo Schwarz, Zentrum für Dynamik komplexer Systeme,
Universität Potsdam, Campus Golm Karl-Liebknecht-Str. 24, 14476 Potsdam, building 28, room 2.107
Phone: (+49-331) 977-1658, Fax : (+49-331) 977-1045

Email: Udo.Schwarz AT uni-potsdam.de

DFG SFB 1294

DFG Sonderforschungsbereich 1294 Data assimilation

DFG SPP 1488

DFG Schwerpunktprogramm 1488 Planetmag


News: odeint C++ library

Check out boost::odeint – our fast and flexible C++ library for integrating differential equations!